Bundles
(Redirected from Graph contents)
The Neurocommons RDF distribution is organized into modules or "bundles". Following is list of what's provided. Each has its own page of documentation.
In most cases bundle B corresponds to named graph http://purl.org/science/graph/B.
| Bundle | Description | Documentation |
|---|---|---|
| Derived from MeSH: | ||
| mesh/mesh-skos | MeSH polyhierarchy represented using SKOS | /mesh/mesh-skos |
| mesh/qualified-headings | MeSH qualified headings - defines one URI for each valid major/minor heading combination | /mesh/qualified-headings |
| Derived from Medline: | ||
| medline/subject-headings | Medline: NLM MeSH subject headings for all articles | /medline/subject-headings |
| medline/titles-years | Medline: title and year of publication for each article | /medline/titles-years |
| Ontologies: | ||
| obo/all | All OBO ontologies | /obo/all |
| galen | Galen ontology | /galen |
| skos | W3C SKOS (Simple Knowledge Organization System) ontology | /skos |
| mesh-eswc06 | Supporting ontology for conversion of MeSH polyhierarchy to RDF | /mesh-eswc06 |
| sciencecommons | Ad hoc Science Commons ontology | /sciencecommons |
| bams | BAMS (Brain Architecture Management System) | /bams |
| senselab | Senselab | /senselab |
| pdspki | PDSP Ki | /pdspki |
| nci-thesaurus | NCI thesaurus | /nci-thesaurus |
| Derived from NCBI: | ||
| ncbi/goa | NCBI Gene Ontology annotations | /ncbi/goa |
| ncbi/homologene | NCBI Homologene selection | /ncbi/homologene |
| ncbi/gene-info | NCBI Gene gene synonyms extraction | /ncbi/gene-info |
| ncbi/gene-pubmed | Links from NCBI Gene to Medline | /ncbi/gene-pubmed |
| Other: | ||
| addgene | Addgene plasmid catalog | /addgene |
| neurocommons-text | Neurocommons text processing pilot | /neurocommons-text |
| aba | ABA (Allen Brain Atlas) | /aba |
| reactome | Reactome records (direct from RDB) | /reactome |
| inferred-relations | Transitive closure of subclass and part_of | /inferred-relations |
See RDF graphs v0 for obsolete documentation.
