Bundles

The Neurocommons RDF distribution is organized into modules or "bundles". Following is list of what's provided. Each has its own page of documentation.

In most cases bundle B corresponds to named graph http://purl.org/science/graph/B.

Bundle Description Documentation
Derived from MeSH:
mesh/mesh-skos MeSH polyhierarchy represented using SKOS /mesh/mesh-skos
mesh/qualified-headings MeSH qualified headings - defines one URI for each valid major/minor heading combination /mesh/qualified-headings
Derived from Medline:
medline/subject-headings Medline: NLM MeSH subject headings for all articles /medline/subject-headings
medline/titles-years Medline: title and year of publication for each article /medline/titles-years
Ontologies:
obo/all All OBO ontologies /obo/all
galen Galen ontology /galen
skos W3C SKOS (Simple Knowledge Organization System) ontology /skos
mesh-eswc06 Supporting ontology for conversion of MeSH polyhierarchy to RDF /mesh-eswc06
sciencecommons Ad hoc Science Commons ontology /sciencecommons
bams BAMS (Brain Architecture Management System) /bams
senselab Senselab /senselab
pdspki PDSP Ki /pdspki
nci-thesaurus NCI thesaurus /nci-thesaurus
Derived from NCBI:
ncbi/goa NCBI Gene Ontology annotations /ncbi/goa
ncbi/homologene NCBI Homologene selection /ncbi/homologene
ncbi/gene-info NCBI Gene gene synonyms extraction /ncbi/gene-info
ncbi/gene-pubmed Links from NCBI Gene to Medline /ncbi/gene-pubmed
Other:
addgene Addgene plasmid catalog /addgene
neurocommons-text Neurocommons text processing pilot /neurocommons-text
aba ABA (Allen Brain Atlas) /aba
reactome Reactome records (direct from RDB) /reactome
inferred-relations Transitive closure of subclass and part_of /inferred-relations

See RDF graphs v0 for obsolete documentation.